Open Source R Software for ChromeOS
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R Software for ChromeOS
Browse free open source R Software for ChromeOS and projects below. Use the toggles on the left to filter open source R Software for ChromeOS by OS, license, language, programming language, and project status.
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Auth0 for AI Agents now in GAConnect your AI agents to apps and data more securely, give users control over the actions AI agents can perform and the data they can access, and enable human confirmation for critical agent actions.
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Lightspeed golf course management softwareFrom tee sheet management, point of sale and payment processing to marketing, automation, reporting and more—Lightspeed is built for the pro shop, restaurant, back office, beverage cart and beyond.
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clusterProfiler
A universal enrichment tool for interpreting omics data
clusterProfiler is an R/Bioconductor package that provides a unified workflow for functional enrichment analysis to interpret high-throughput omics results. It supports both over-representation analysis and gene set enrichment analysis, letting you work with unranked gene lists or ranked statistics from differential pipelines. The package connects to multiple knowledge bases—such as Gene Ontology, KEGG, Reactome, Disease Ontology, MeSH and others—through a consistent interface so you can query different biological lenses without rewriting code. It is designed for breadth, covering coding and non-coding features and thousands of organisms by leveraging continuously updated annotations. Results are returned in tidy, manipulation-friendly structures and pair naturally with rich visualization functions (via companion tooling) to summarize pathways, terms, and gene–set relationships. -
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Data Science Specialization
Course materials for the Data Science Specialization on Coursera
The Data Science Specialization Courses repository is a collection of materials that support the Johns Hopkins University Data Science Specialization on Coursera. It contains the source code and resources used throughout the specialization’s courses, covering a broad range of data science concepts and techniques. The repository is designed as a shared space for code examples, datasets, and instructional materials, helping learners follow along with lectures and assignments. It spans essential topics such as R programming, data cleaning, exploratory data analysis, statistical inference, regression models, machine learning, and practical data science projects. By providing centralized resources, the repo makes it easier for students to practice concepts and replicate examples from the curriculum. It also offers a structured view of how multiple disciplines—programming, statistics, and applied data analysis—come together in a professional workflow. -
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ProgrammingAssignment2
Repository for Programming Assignment 2 for R Programming on Coursera
This repository contains the second programming assignment for an R course, focused on caching expensive computations by leveraging R’s scoping rules. The assignment walks you through creating a special matrix object that stores both a matrix and its cached inverse, avoiding repeated calls to costly operations. It builds on a worked example that caches the mean of a numeric vector, demonstrating how the operator preserves state across function calls. You then implement analogous logic for matrices via two functions, one to construct the cache-aware object and another to compute or retrieve the cached inverse. The instructions emphasize using solve for inversion and assuming that the supplied matrix is always invertible. The repository outlines the workflow for forking, editing the provided R stub, committing your solution, and submitting your repository URL as the final deliverable. -
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Shiny
Build interactive web apps directly from R with Shiny framework
Shiny is an R package from RStudio that enables users to build interactive web applications using R without requiring knowledge of JavaScript, HTML, or CSS. It allows statisticians and data scientists to turn their analyses into fully functional web dashboards with reactive elements, data inputs, visualizations, and controls, making data communication more effective and dynamic. -
G-P - Global EOR SolutionWith G-P's industry-leading Employer of Record (EOR) and Contractor solutions, you can hire, onboard and manage teams in 180+ countries — quickly and compliantly — without setting up entities.
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Awesome Network Analysis
A curated list of awesome network analysis resources
awesome-network-analysis is a curated list of resources focused on network and graph analysis, including libraries, frameworks, visualization tools, datasets, and academic papers. It covers multiple programming languages and domains like sociology, biology, and computer science. This repository serves as a central reference for researchers, analysts, and developers working with network data. -
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CausalImpact
An R package for causal inference in time series
The CausalImpact repository houses an R package that implements causal inference in time series using Bayesian structural time series models. Its goal is to estimate the effect of an intervention (e.g. a marketing campaign, policy change) on a time series outcome by predicting what would have happened in a counterfactual “no intervention” world. The package requires as input a response time series plus one or more control (covariate) time series that are assumed unaffected by the intervention, and it divides the time horizon into “pre-intervention” and “post-intervention” periods. It uses Bayesian modeling to fit a structural time series to the pre-period and extrapolate a counterfactual prediction for the post period, then compares observed vs predicted to infer the causal effect. The package supports plotting, summary tables, and verbal narratives for interpretive reports. -
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R4DS (R for Data Science)
R for data science: a book
“R for Data Science” (r4ds) is the source material (book + examples) by Hadley Wickham et al., intended to teach data science using R and the tidyverse. It covers the workflow from importing data, tidying, transforming, visualizing, modelling, communicating results, and programming in R. The repository contains the source files (Quarto / RMarkdown), example datasets, visualizations, exercises, and all content needed to build the book. Includes many example datasets, diagrams, code samples, and “hands-on” exercises. Comprehensive coverage of data-science workflow: data import, cleaning, transformation, exploration, modelling etc. Includes topics beyond basics: relational data (joins), date/time, strings, working with missing values, visualizing data, etc. -
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Statistical Rethinking 2024
This course teaches data analysis
The 2024 repository is the most recent version of the course, reflecting ongoing refinements in pedagogy, statistical modeling techniques, and coding practices. It provides updated notebooks, R scripts, and model examples, some streamlined and restructured compared to previous years. The 2024 repo also highlights the transition toward more robust Stan models and integration with newer Bayesian workflow practices, continuing to emphasize accessibility for learners while modernizing the tools. This version is designed for students following the 2024 lecture series, offering the most current set of examples, exercises, and teaching material aligned with the Statistical Rethinking framework. Online, flipped instruction. I will pre-record the lectures each week. We'll meet online once a week for an hour to discuss the material. The discussion time (3-4pm Berlin Time) should allow people in the Americas to join in their morning. -
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easystats
The R easystats-project
easystats is a meta‑package that installs and unifies a suite of R packages for post‑processing statistical models. It delivers a consistent API to assess model performance, effect sizes, parameters, and to generate reports and visualizations, all with minimal dependencies and maximum clarity. -
AI-First Supply Chain ManagementLogility is a market-leading provider of AI-first supply chain management solutions engineered to help organizations build sustainable digital supply chains that improve people’s lives and the world we live in. The company’s approach is designed to reimagine supply chain planning by shifting away from traditional “what happened” processes to an AI-driven strategy that combines the power of humans and machines to predict and be ready for what’s coming. Logility’s fully integrated, end-to-end platform helps clients know faster, turn uncertainty into opportunity, and transform the supply chain from a cost center to an engine for growth.
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golem
A Framework for Building Robust Shiny Apps
golem is an opinionated framework for developing production-grade Shiny applications in R, treating the app like a full R package. It scaffolds project structure, testing, documentation, CI/CD, and supports containerization—streamlining the build-to-deploy pipeline while enforcing clean architecture and maintainability. -
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ComplexHeatmap
Make Complex Heatmaps
ComplexHeatmap is an R/Bioconductor package by Zuguang Gu et al. designed to create highly flexible, complex, richly annotated heatmaps and related visualizations. It allows arranging multiple heatmaps, adding annotations, combining heatmaps, customizing colors, layouts, and integrating other plots. Often used in genomics/bioinformatics to show expression, methylation, etc., with sidebars, annotations, clustering, etc. Highly customizable layout: combining different heatmaps, arranging and splitting, dealing with multiple heatmap merges, combining with other plots etc. Integration with Shiny / interactive heatmaps via companion packages (InteractiveComplexHeatmap) to allow interactivity, etc. -
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Data Analysis for the Life Sciences
Rmd source files for the HarvardX series PH525x
This repository holds the R Markdown (.Rmd) source files for the PH525x / HarvardX course series (Data Analysis for the Life Sciences / Genomics) managed by GenomicsClass. It functions as the canonical source for course lab exercises, lecture modules, and reading materials in reproducible format. Students and learners use these R Markdown files to follow along, knit notebooks, run code samples, and complete the lab-based assignments. The repo is licensed under MIT, allowing reuse and modification. It is part of a larger ecosystem: the compiled HTML / book version of the labs is published via a companion “book” repository, which presents a polished, browsable version of the materials. The content covers topics such as data wrangling in R, statistical inference, genomics workflows, Bioconductor packages, and project-based analyses. Because it’s open and modular, contributors can suggest improvements, update modules, or add new exercises. -
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DataScienceR
a curated list of R tutorials for Data Science, NLP
The DataScienceR repository is a curated collection of tutorials, sample code, and project templates for learning data science using the R programming language. It includes an assortment of exercises, sample datasets, and instructional code that cover the core steps of a data science project: data ingestion, cleaning, exploratory analysis, modeling, evaluation, and visualization. Many of the modules demonstrate best practices in R, such as using the tidyverse, R Markdown, modular scripting, and reproducible workflows. The repository also shows examples of linking R with external resources — APIs, databases, and file formats — and integrating into larger pipelines. It acts as a learning scaffold for students or beginners transitioning to more advanced data science work in R, offering a hands-on, example-driven approach. The structure encourages modularity, readability, and reproducible practices, making it a useful reference repository for learners and educators alike. -
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Investing
Investing Returns on the Market as a Whole
This repository, owned by the user zonination (Zoni Nation), presents a data visualization and analysis project on long-term returns from broad stock market indexes, especially the S&P 500. The author gathers historical price data (adjusted for inflation and dividends) and computes growth trajectories under a “buy and hold” strategy over decades. The key insight illustrated is that over sufficiently long holding periods (e.g. 40 years), the stock market stabilizes and nearly always yields positive returns, even accounting for extreme market crashes and recessions. The visualizations show “return curves” for different starting years and durations, and also illustrate the probability of losses over various time horizons. The project is centered on transparency in finance and encourages users to examine the data themselves; the code is shared in R and uses ggplot2 for plotting. -
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MetBrewer
Color palette package inspired by Metropolitan Museum of Art in NY
MetBrewer is an R package that provides color palettes inspired by artworks and collections in the Metropolitan Museum of Art (The Met). The idea is to draw on the rich visual heritage of fine art to generate palettes that are aesthetically pleasing and grounded in real-world artistic color usage. The palettes are curated, named after artworks or styles, and often include notes about colorblind-friendliness and contrast. The package supports both discrete and continuous palette types, with interpolation when more colors are requested than originally defined. It also provides ggplot2-friendly scale functions (scale_color_met_c, scale_fill_met_d, etc.) so integration into typical R plotting workflows is smooth. Internally, the package includes functions to list available palettes, check which are colorblind-friendly, and visualize all palettes at once. -
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NYC Taxi Data
Import public NYC taxi and for-hire vehicle (Uber, Lyft)
The nyc-taxi-data repository is a rich dataset and exploratory project around New York City taxi trip records. It collects and preprocesses large-scale trip datasets (fares, pickup/dropoff, timestamps, locations, passenger counts) to enable data analysis, modeling, and visualization efforts. The project includes scripts and notebooks for cleaning and filtering the raw data, memory-efficient processing for large CSV/Parquet files, and aggregation workflows (e.g. trips per hour, heatmaps of pickups/dropoffs). It also contains example analyses—spatial and temporal visualizations like maps, time-series plots, and hotspot detection—highlighting insights such as patterns of demand, peak times, and geospatial distributions. The repository is often used as a benchmark dataset and example for teaching, benchmarking, and demonstration purposes in the data science and urban analytics communities. -
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R Color Palettes
Comprehensive list of color palettes available in R
This repository is a curated collection of color palettes crafted or curated for data visualization in R. The goal is to provide designers, data scientists, and R users with aesthetically pleasing, perceptually consistent color schemes that work well for plots, maps, and graphics. The repo contains static files listing palette definitions (e.g. hex codes, named hues), sample visualizations showing how each palette performs under different contexts (categorical, sequential, diverging), and helper functions/scripts to import or use the palettes in R. The author also documents palette provenance and usage guidance (contrast, readability, colorblind friendliness). While not a full package in itself, it’s often used as a reference or source of palette definitions for other R plotting or theming packages. -
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R Packages (r-pkgs)
Building R packages
rpkgs (in GitHub via hadley/r-pkgs) is the source (text + examples) for the book R Packages by Hadley Wickham and Jenny Bryan. The book teaches how to develop, document, test, and share R packages: the practices, tools, infrastructure, workflows, and best practices around package development in R. The repository contains the code, text, site content for building the book, examples, exercises, etc. It is not a software library to be loaded in R (except perhaps the examples), but a resource/guide/manual. The first edition is no longer available online. A second edition is under development and available. -
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RStudio Cheatsheets
Curated collection of official cheat sheets for data science tools
The cheatsheets repository from RStudio is a curated collection of official cheat sheets for R, RStudio, the tidyverse, Shiny, and related data science tools. Each cheat sheet is a single (or double) page PDF that condenses important syntax, functions, workflows, and best practices into a visually organized format ideal for quick reference. The repository contains source files (R Markdown or LaTeX) that generate the cheat sheets, version history, and metadata (title, author, description) for each. It covers topics such as data wrangling, data import, modeling, visualization, RStudio IDE shortcuts, Shiny development, and the tidyverse suite (dplyr, ggplot2, tidyr, purrr). These cheat sheets are widely used by R learners, educators, and practitioners as quick reference tools, and they often ship with RStudio by default or are linked from RStudio’s help/documentation pages. Users can also contribute new cheat sheet proposals, corrections, or translations via pull requests. -
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Scripting Language Bindings
A port of WFOPT to the several scripting languages
This project contains bindings for various scripting languages to the Wheefun Options Parsing Library. It is meant to provide parity with the C implementation so .NET languages can take advantage of WFOPT. For more information, please see the main page. -
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Statistical Rethinking 2022
Statistical Rethinking course winter 2022
This repository hosts the 2022 version of the Statistical Rethinking course. It contains course materials such as R scripts, notebooks, and worked examples aligned with McElreath’s textbook. The code emphasizes Bayesian data analysis using R, the rethinking package, and Stan models. It includes lecture code files, example datasets, and structured exercises that parallel the topics covered in the lectures (probability, regression, model comparison, Bayesian updating). The repo functions as a direct hands-on reference for students following the 2022 recorded lecture series. There are 10 weeks of instruction. Links to lecture recordings will appear in this table. Weekly problem sets are assigned on Fridays and due the next Friday, when we discuss the solutions in the weekly online meeting. -
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Statistical Rethinking 2023
Statistical Rethinking Course for Jan-Mar 2023
The 2023 edition modernizes and expands on the same curriculum, adjusting exercises and code for newer versions of R, Stan, and supporting packages. It continues to provide scripts for lectures and tutorials, while integrating refinements to examples, notation, and computational workflows introduced that year. Compared with 2022, some models are rewritten for clarity, and teaching materials reflect refinements in McElreath’s evolving presentation of Bayesian data analysis. Students following the 2023 lecture videos use this repository as their coding reference. There are 10 weeks of instruction. Links to lecture recordings will appear in this table. Weekly problem sets are assigned on Fridays and due the next Friday, when we discuss the solutions in the weekly online meeting. -
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TOFSIMS
R/Bioconductor toolkit for mass spectrometry data
The tofsims project is an R/Bioconductor toolkit designed for processing, analyzing, and visualizing imaging mass spectrometry data from Time-of-Flight Secondary Ion Mass Spectrometry (ToF-SIMS) instruments. It supports importing raw and preprocessed data from popular instrument platforms (e.g. IONTOF, Ulvac-Phi) and provides methods for mass calibration, peak picking, and peak integration. The package allows transformation of spectra into 2D image structures (mass images), with operations such as binning, scaling, subsetting, and visual rendering. For data exploration and dimensionality reduction, it includes multivariate methods common in the ToF-SIMS community: PCA (Principal Component Analysis), MCR (Multivariate Curve Resolution), MAF (Maximum Autocorrelation Factors), and MNF (Minimum Noise Fraction). It also interoperates with Bioconductor’s imaging stack (e.g. EBImage) so users can apply segmentation and image analysis operations on mass images. -
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bbplot
R package that helps create and export ggplot2 charts
bbplot is an R package developed by the BBC visual journalism team aimed at helping data journalists and analysts produce chart styles consistent with BBC aesthetics. It provides functions and themes that make it easier to adopt BBC’s visual style (fonts, colors, annotations, layout) in ggplot2 plots. The package includes helper functions for axis labels, captions, legends, branding (e.g. BBC red lines or accents), and common chart types styled for editorial presentation. It offers templates and defaults that reduce styling overhead so users can focus on data and storytelling rather than aesthetic minutiae. Because visual consistency is important in media, bbplot helps non-designers build plots that align with professional publication standards. The repository includes documentation, vignettes, example plots, and guidelines for customization (e.g. switching colors, modifying typography). -
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benchm-ml
A benchmark of commonly used open source implementations
This repository is designed to provide a minimal benchmark framework comparing commonly used machine learning libraries in terms of scalability, speed, and classification accuracy. The focus is on binary classification tasks without missing data, where inputs can be numeric or categorical (after one-hot encoding). It targets large scale settings by varying the number of observations (n) up to millions and the number of features (after expansion) to about a thousand, to stress test different implementations. The benchmarks cover algorithms like logistic regression, random forest, gradient boosting, and deep neural networks, and they compare across toolkits such as scikit-learn, R packages, xgboost, H2O, Spark MLlib, etc. The repository is structured in logical folders, each corresponding to algorithm categories.
