Open Source Java Research Software

Journal article to cite: Jahnke, G.; Smidla, J.; Poczai, P. MolMarker: A Simple Tool for DNA Fingerprinting Studies and Polymorphic Information Content Calculation. Diversity 2022, 14, 497. https://doi.org/10.3390/d14060497 Leave a review, please! Your opinion matters! :-) MolMarker is user-friendly software to help evaluate the research results obtained by molecular markers. The software can handle genetic (e.g. SSR) and biochemical (e.g. isozyme) data, can construct similarity matrices and UPGMA or NJ dendograms. It can calculate the frequencies of null alleles in the case of genetic data as well as H (heterosigosity) and PIC (polymorphic Information Content) values. Parentage analyses gives a list of possible parent-offspring combinations, and likelihood ratio statistics corresponding to the detected combinations. For details see MolMarker Manual.pdf

The Contingency Management Framework helps design fault-tolerant, and resource-aware systems. It monitors vital resource (e.g. the network) and sets up coping strategies when different contingent states occurs. Used in Ubiquitous Computing research.

- Java SE 1.7 compatible - Can be run on both Windows/Linux PC - Can be run on Android devices(Tested on ASUS fonetab7, ASUS zenfone4, Samsung Galaxy S4) - Can be run on reflashed ARM-based AndroidTV sticks (Tested on MK808) - No custom firmware for EV3 brick - Supports about 15 EV3/NXT/HT sensors - Supports EV3 & NXT motors - Supports Android camera

Implementation of "online" erasure codec for Hadoop Distributed File System (HDFS). It contains native C library integrated with Java code base of HDFS.

A prototype system designed to aid in the identification of handwriting, particularly medieval, following the principles outlined at http://www.digitalmedievalist.org/journal/3/stokes/ and in forthcoming publications.

The project aims at developing a system that will consist of a crawler, a user interface and a database that will allow user to obtain research papers in PDF format from any domain and carry out the analysis.

Java generic API for search algorithms on graphs implicitly given by tree node expansion operator

A software tool enabling the user to browse through an image stack created by a confocal microscope. Points can be plotted through the stack, producing a digital 3D representation, which can be viewed in 3D and compared with other plots.

A toolkit to aid the process of Systematic Review and Systematic Mapping Study.

The purpose of MoRe4ABM - Managing Ongoing RElationships for ABM - is to support representing and analysing social networks in agent-based modeling. The library provides a large number of network generators and a comprehensive framework for network and node level measures. It integrates well with Repast Simphony and uses the JUNG library. More4ABM furthermore supports initialisation of geographically explicit networks using GIS.

Navmol is a software that allows people that are blind or visually impaired to navigate and edit molecular structures in a simple and intuitive way.

SIMACT is a 3D smart home simulator for activity recognition developped at LIARA during the summer 2009. The goal of SIMACT is to enable scientist to simulate execution sequence of activity inside a smart home to conduct their research.

Webtracks’ objective is to develop an approach and mechanism for constructing and propagating structured information to describe the linkage between distributed research objects in the context of academic activities.

Acoma process email communication on server or desktop side and attach relevant information from various sources to an email messages. It can be used within any email client or mobile device since it is hooked up to email as a proxy to SMTP or POP3.

A tutorial I use for getting a jump start on lucene usage throughout my projects.

A little xml tool which can filter the XML documents according the XPath.Only support part of the XPath. Hope to support full XPath expression and XQuery in the future.

The aim of the project is a lightweight intrusion detection library for embedded devices which supports MSP430 and ARM Cortex based devices. Features include DSP/SIMD support, IoT and embedded protocols, distributed operation, event and history management, tool supported configuration and visualization. There is a Java port that supports less features.

stocleka is a project divided into a UI and a library for cleaning user stories and converting them to arff files (used for Weka). it may be mainly used for research and scientific purposes.