Best Genomics Data Analysis Software for Startups
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Compare the Top Genomics Data Analysis Software for Startups as of November 2025
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What is Genomics Data Analysis Software for Startups?
Genomics data analysis software helps researchers and scientists analyze and interpret large-scale genomic data, enabling insights into genetic variations, mutations, and biological functions. It provides tools for processing raw genomic sequences, aligning them to reference genomes, and identifying significant patterns or mutations. The software often includes features like data visualization, statistical analysis, and integration with other biological datasets to support comprehensive research. By automating complex analyses, genomics data analysis software accelerates research workflows and improves the accuracy of genetic insights. Ultimately, it advances scientific discovery and personalized medicine by enabling a deeper understanding of the human genome and other organisms. Compare and read user reviews of the best Genomics Data Analysis software for Startups currently available using the table below. This list is updated regularly.
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Dendi LIS
Dendi
Dendi is a configurable LIS platform that gives clinical labs the flexibility to support a variety of modalities (toxicology, clinical chemistry, molecular, PGx, CGx, genomics, and more). Designed by a team of medical lab experts and modern software developers, the end product is one that hundreds of lab professionals trust for high-volume and novel testing workflows. Built for connectivity, Dendi's in-house integrations team sets up and maintains interfaces quickly, whether it's for instruments and analyzers, EHR/EMRs, billing service providers, or third-party services. Future-proof your lab with the tools and integrations that you need to stay ahead. Dendi's on-staff lab experts understand your needs and provide end-to-end solutions including training, support, product updates, and consultation to keep your lab operating optimally.Starting Price: 1250 -
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JADBio AutoML
JADBio
JADBio is a state-of-the-art automated Machine Learning Platform without the need for coding. With its breakthrough algorithms it can solve open problems in machine learning. Anybody can use it and perform a sophisticated and correct machine learning analysis even if they do not know any math, statistics, or coding. It is purpose-built for life science data and particularly molecular data. This means that it can deal with the idiosyncrasies of molecular data such as very low sample size and very high number of measured quantities that could reach to millions. Life scientists need it to understand what are the features and biomarkers that are predictive and important, what is their role, and get intuition about the molecular mechanisms involved. Knowledge discovery is often more important than a predictive model. So, JADBio focuses on feature selection and its interpretation.Starting Price: Free -
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Geneious
Geneious
Geneious Prime makes bioinformatics accessible by transforming raw data into visualizations that make sequence analysis intuitive and user-friendly. Simple sequence assembly and easy editing of contigs. Automatic annotation for gene prediction, motifs, translation, and variant calling. Genotype microsatellite traces with automated ladder fitting and peak calling and generates tables of alleles. Beautiful visualizations of annotated genomes and assemblies are displayed in a highly customizable sequence view. Powerful SNP variants analysis, simple RNA-Seq expression analysis, and amplicon metagenomics. Design and test PCR and sequencing primers and create your own searchable primer database. Geneious Biologics is a flexible, scalable, and secure way to streamline your antibody analysis workflows, create high-quality libraries and select the optimal therapeutic candidates.Starting Price: $1,280 per year -
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OmicsBox
BioBam Bioinformatics S.L.
OmicsBox is a leading bioinformatics solution that offers end-to-end data analysis of genomes, transcriptomes, metagenomes, and genetic variation studies. The application is used by top private and public research institutions worldwide and allows researchers to easily process large and complex data sets, and streamline their analysis process. It is designed to be user-friendly, efficient, and with a powerful set of tools to extract biological insights from omics data. The software is structured in different modules, each with a specific set of tools and functions designed to perform different types of analysis, such as de-novo genome assemblies, genetic variation analysis, differential expression analysis, and taxonomic classifications of microbiome data, including the functional interpretation and rich visualizations of results. The functional analysis module includes the popular Blast2GO annotation methodology and makes OmicsBox particularly suited for non-model organism researchStarting Price: €100/month/seat -
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Partek Flow
Partek
Partek bioinformatics software delivers powerful statistical and visualization tools in an easy-to-use interface. Researchers of all skill levels are empowered to explore genomic data quicker and easier than ever before. We turn data into discovery®. Pre-installed workflows and pipelines in our intuitive point-and-click interface make sophisticated NGS and array analysis attainable for any scientist. Custom and public statistical algorithms work in concert to easily and precisely distill NGS data into biological insights. Genome browser, Venn diagrams, heat maps, and other interactive visualizations reveal the biology of your next-generation sequencing and array data in brilliant color. Our Ph.D. scientists are always just a phone call away and ready to help with your NGS analysis any time you have questions. Designed specifically for the compute-intensive needs of next-generation sequencing applications with flexible installation and user management options. -
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hc1
hc1
Founded to improve lives with high-value care, hc1 has emerged as the leader in bioinformatics for precision testing and prescribing. The cloud-based hc1 High-Value Care Platform® organizes volumes of live data, including lab results, genomics, and medications, to deliver solutions that ensure that the right patient gets the right test and the right prescription. Today, the hc1 Platform powers solutions that optimize diagnostic testing and prescribing for millions of patients nationally. To learn more about hc1's proven approach to personalizing care while eliminating waste for thousands of health systems, diagnostic laboratories, and health plans, visit www.hc1.com. -
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Universal Analysis Software (UAS) provides a platform for analyzing and managing forensic genomic data, simplifying complex bioinformatics. The UAS is an all-inclusive solution, containing analysis modules supporting all current ForenSeq workflows including ForenSeq MainstAY, ForenSeq Kintelligence, ForenSeq DNA Signature Prep, ForenSeq mtDNA Whole Genome, and ForenSeq mtDNA Control Region. UAS rapidly generates FASTQ files, performs alignment, and calls forensically relevant variants from NGS data. Extensive testing backs highly reliable variant calls to deliver accurate results in a user-friendly package with no per-seat licenses. Designed specifically for forensic analysts, UAS streamlines handling of base-by-base sequence information and contains a range of features to enable everything from efficient review of everyday STR profiles to detailed analysis of the most challenging samples.
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XIFIN LIS
XIFIN
The award-winning XIFIN LIS is a fully scalable SaaS-based laboratory information system that offers multi-specialty workflows, a comprehensive toolset, flexible and secure connectivity and leading-edge capabilities that optimize high volume and complex testing labs. In response to value-based and patient-centered coordinated care models, the healthcare industry is shifting. Accelerating the shift is the exponential growth in the adoption of genomic testing and personalized medicine using next-generation sequencing (NGS). Laboratories must adapt their existing processes to meet the challenge of implementing and reporting these high complexity tests. Since diagnostic insights have the potential to reduce overall healthcare costs and improve patient care – it is crucial that laboratories better integrate with the healthcare ecosystem. These demands are driving the need for more interaction and greater communication across all healthcare and diagnostic providers. -
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Healthcare Data Analytics
Inspirata
With more than 70% of healthcare data stored in clinical documents, reports, patient chart, clinician notes and discharge letters, our healthcare specific Natural Language Processing and AI Engine identifies the concepts, attributes and context needed to deliver business insights, optimize billing, identify and stratify patient risks, compute quality metrics or collect patient sentiment and outcome data. Leverage difficult-to-surface or entirely untapped data sources to enhance your clinical research or business intelligence. Leverage our database of thousands of clinical concepts such as genomic biomarkers, symptoms, side effects, and medications. Identify disease characteristics, medications, or risk factors from clinical documents to stratify patients and improve the quality of care. Protect the identity of data subjects while maintaining data utility through document de-identification. -
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PacBio
Pacific Biosciences (PacBio)
PacBio (Pacific Biosciences) is a premier life science technology company that is designing, developing and manufacturing advanced sequencing solutions to help scientists and clinical researchers resolve genetically complex problems. Our products and technologies stem from two highly differentiated core technologies focused on accuracy, quality and completeness which include our HiFi long-read sequencing and our SBB® short-read sequencing technologies. Our products address solutions across a broad set of research applications including human germline sequencing, plant and animal sciences, infectious disease and microbiology, oncology, and other emerging applications. The Revio system adds affordability, high throughput, and ease of use to a foundation of long reads, exceptional accuracy, and direct methylation detection. The Onso system is an innovative benchtop short-read DNA sequencing platform with an extraordinary level of accuracy using PacBio sequencing by binding. -
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Recursion
Recursion
We are a clinical-stage biotechnology company decoding biology by integrating technological innovations across biology, chemistry, automation, machine learning and engineering to industrialize drug discovery. Increased control over biology with tools such as CRISPR genome editing and synthetic biology. Reliable automation of complex laboratory research at an unprecedented scale using advanced robotics. Iterative analysis of, and inference from, large, complex in-house datasets using neural network architectures. Increasing elasticity of high-performance computation using cloud solutions. We are leveraging new technology to create virtuous cycles of learning around datasets to build a next-generation biopharmaceutical company. A synchronized combination of hardware, software and data used to industrialize drug discovery. Reshaping the traditional drug discovery funnel. One of the largest, broadest and deepest pipelines of any technology-enabled drug discovery company. -
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Eidogen-Sertanty Target Informatics Platform (TIP)
Eidogen-Sertanty
Eidogen-Sertanty's Target Informatics Platform (TIP) is the world's first structural informatics system and knowledgebase that enables researchers with the ability to interrogate the druggable genome from a structural perspective. TIP amplifies the rapidly expanding body of experimental protein structure information and transforms structure-based drug discovery from a low-throughput, data-scarce discipline into a high-throughput, data-rich science. Designed to help bridge the knowledge gap between bioinformatics and cheminformatics, TIP supplies drug discovery researchers with a knowledge base of information that is both distinct from and highly complementary to information furnished by existing bio- and cheminformatics platforms. TIP's seamless integration of structural data management technology with unique target-to-lead calculation and analysis capabilities enhances all stages of the discovery pipeline. -
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Deep Lens VIPER
Deep Lens
VIPER automates the screening process from remote patient identification (at the point of diagnosis) to qualified enrollment. Utilizing artificial intelligence, VIPER identifies and matches patients to precision trials in the narrow window of opportunity through lab-agnostic genomic data ingestion, EMR and pathology data in a way that is customized to both the patient and to the research. VIPER searches the customized matching engine to find the best available clinical trials for a patients’ specific diagnosis—at the time of diagnosis. Through workflow integration, VIPER sends real-time notifications of a patient's eligibility for available clinical trials to the entire care team in the narrow enrollment window. VIPER also provides real-time interactive dashboards with rich data mining capabilities to aggregate site and study level patient data to hit your study KPIs. -
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Luna
Luna
People must be at the center of research to drive health breakthroughs faster. That’s why we’ve built a platform that brings together individuals, communities, and researchers through trust, transparency, and shared value. Each of us has unique details that hold clues to the next medical breakthrough, sharing your health data helps uncover new insights. Communities bring people together to help find answers fast. Collect health experiences and data directly from participants over the course of your studies, we manage it so you can get started right away. We unite individuals and communities, putting their health data to work to answer life’s most pressing questions. When people come together with a collective vision of responsibility and fairness, it creates a force so powerful that it can alter the face of longstanding systems and institutions. Created by a team of passionate genomics and technology leaders. -
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Genomenon
Genomenon
Pharma companies need comprehensive genomic information to drive successful precision medicine programs, but decisions are often made using only a fraction of the data available, about 10%. Genomenon delivers 100% of the data. An efficient and cost-effective natural history research solution for pharma, ProdigyTM Patient Landscapes support the development of rare disease therapies by enhancing insights contained in retrospective and prospective health data. Using a powerful AI-driven approach, Genomenon delivers a comprehensive and expert assessment of every patient in the published medical literature, in a fraction of the time. Don’t miss anything, get insight into every genomic biomarker published in the medical literature. Every scientific assertion is supported by empirical evidence from the medical literature. Identify all genetic drivers and pinpoint which variants are known to be pathogenic according to ACMG clinical standards. -
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Genoox
Genoox
Through our diverse and growing community, Genoox accumulates the most relevant database and delivers actionable, real-world genomic insights that impact lives, improve clinical outcomes, and shape the business of healthcare. Our solutions are changing the face of genomics. Genoox uses the power of its community and combines public data with community data to streamline the path from DNA sample to clinical report, impacting patient care by making genomic data accessible and actionable at the point of care. Genoox enhances research and life sciences companies by providing an insight platform derived from real-world data and evidence and powered by our community with robust genomic analytics, helping researchers simplify complex genomic data and make impactful discoveries using the most advanced genetic tools and applications. Genoox helps biosystems companies such as DNA sequencing companies to bundle its state-of-the-art genomic engine with dedicated assays. -
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Genospace
Genospace
At Genospace, we understand that genomics is driving the development of precision medicine, yet scaling its delivery is an unsolved challenge. We’re here to help. Our platform is designed to make biomedical data meaningful and accessible to everyone, especially those on the front lines of care delivery. Arm your clinicians and researchers with the information they need to make informed decisions and join us in our mission of leveraging high-dimensional molecular data to improve individual patient outcomes and accelerate drug development and research. Large-scale population data is necessary for drug development and research. Conduct cohort-driven analyses to inform your research activities with the Genospace platform. We specialize in clinical trial research. Use the Genospace platform to match fragmented patient data to complex trial criteria and expedite patient accruals. Integrate genomic medicine into mainstream clinical care with the Genospace platform. -
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Azenta Life Sciences
Azenta Life Sciences
Azenta Life Sciences offers scalable, powerful, and flexible informatics sample processing solutions that enable lab systems to efficiently deploy across all sites and utilize built-in project and diagnostic operations management functionality. We provide unrivaled sample exploration and management solutions to help you accelerate discovery, development, and delivery. Azenta Life Sciences offers cloud-based informatics solutions for sample processing that automate laboratory workflows and optimize staff workload through standardized processes. The software offers modules that manage clinical trials, families and patients, informed consent, storage, diagnostics, next-generation sequencing, and sample processing. Interfaces with external data sources and offers flexible options to integrate 3rd party systems and instruments. -
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AWS HealthOmics
Amazon
Securely combine the multiomic data of individuals with their medical history to deliver more personalized care. Use purpose-built data stores to support large-scale analysis and collaborative research across entire populations. Accelerate research by using scalable workflows and integrated computation tools. Protect patient privacy with HIPAA eligibility and built-in data access and logging. AWS HealthOmics helps healthcare and life science organizations and their software partners store, query, and analyze genomic, transcriptomic, and other omics data and then generate insights from that data to improve health and advance scientific discoveries. Store and analyze omics data for hundreds of thousands of patients to understand how omics variation maps to phenotypes across a population. Build reproducible and traceable clinical multiomics workflows to reduce turnaround times and increase productivity. Integrate multiomic analysis into clinical trials to test new drug candidates. -
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DNAnexus Titan
DNAnexus
DNAnexus Titan™ powers the future of genomics research and clinical pipelines with trusted, high-performance data analysis solutions. Legacy informatics tools were not designed to manage today's higher volumes of sequencing data. With home-grown, do-it-yourself systems, research centers and clinical diagnostic testing companies are finding it difficult and time-consuming to create, refine, validate, and execute pipelines at scale. DNAnexus Titan™ removes bottlenecks in development and production with a unified platform that brings all your data and pipelines together in one place and delivers unparalleled efficiencies. Leave the heavy lifting of managing industry and region-specific security and compliance requirements to us, while meeting the growing global demand for sequencing data. -
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NVIDIA Clara
NVIDIA
Clara’s domain-specific tools, AI pre-trained models, and accelerated applications are enabling AI breakthroughs in numerous fields, including medical devices, imaging, drug discovery, and genomics. Explore the end-to-end pipeline of medical device development and deployment with the Holoscan platform. Build containerized AI apps with the Holoscan SDK and MONAI, and streamline deployment in next-generation AI devices with the NVIDIA IGX developer kits. The NVIDIA Holoscan SDK includes healthcare-specific acceleration libraries, pre-trained AI models, and reference applications for computational medical devices. -
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NVIDIA Parabricks
NVIDIA
NVIDIA® Parabricks® is the only GPU-accelerated suite of genomic analysis applications that delivers fast and accurate analysis of genomes and exomes for sequencing centers, clinical teams, genomics researchers, and high-throughput sequencing instrument developers. NVIDIA Parabricks provides GPU-accelerated versions of tools used every day by computational biologists and bioinformaticians—enabling significantly faster runtimes, workflow scalability, and lower compute costs. From FastQ to Variant Call Format (VCF), NVIDIA Parabricks accelerates runtimes across a series of hardware configurations with NVIDIA A100 Tensor Core GPUs. Genomic researchers can experience acceleration across every step of their analysis workflows, from alignment to sorting to variant calling. When more GPUs are used, a near-linear scaling in compute time is observed compared to CPU-only systems, allowing up to 107X acceleration. -
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XetaBase
Zetta Genomics
The unique XetaBase platform simplifies tertiary analysis, aggregating, indexing, and enriching secondary genomic data, enabling continual re-interpretation to unlock research and clinical insight. XetaBase accelerates data management and the cost-effective application of genomic data in the lab and clinic. XetaBase encompasses genomic scale, the greater the volume and complexity, the greater the insight and outcomes. XetaBase is a genomic-native technology, built on the open-source, OpenCB software platform to meet the scale, speed, and re-interpretation demands of genomic medicine. Zetta Genomics delivers genomic data management fit for the precision medicine age. XetaBase is a completely novel solution to the challenges of genomic data. It sweeps away obsolete flat file approaches to bring meaningful and actionable genomic data into the lab and the clinic. XetaBase empowers continual re-interpretation while scaling seamlessly as databases grow to encompass genome sequences. -
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g.nome
Almaden Genomics
g.nome, a cloud-native platform that delivers streamlined, scalable, and interoperable workflows for next-generation sequencing analysis. g.nome provides a low-code/no-code pipeline build. With pre-built workflows and toolkits from a curated library, g.nome is giving power to researchers — enabling them to import custom code, handle big datasets reliably, and optimize team collaboration from anywhere. With g.nome, long-time barriers linked to workflow language, process flow visibility, and quality control are removed. All that’s left are streamlined, scalable, and interoperable genomic workflows — leaving research teams to do what they do best: focus on the science. -
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SOPHiA GENETICS
SOPHiA GENETICS
Our global data-sharing network generates clinically actionable insights from data to improve patient outcomes worldwide. SOPHiA GENETICS’ mission is to build the future of AI-assisted medicine. We are integrating multimodal healthcare-omics data, unlocking the existing data silos, and developing machine learning models to produce actionable insights that could eventually support healthcare professionals to improve patient outcomes. The revamped interface, new features, and cutting-edge capabilities are set to further accelerate precision medicine workflows, bringing us another step closer to democratizing data-driven medicine. Powered by AI and machine learning (ML), our global cloud-based platform provides a safe, secure, and instantly accessible environment to standardize, compute, and analyze digital health data, generating insights from complex multimodal data sets that have the potential to improve diagnosis, therapy selection, analysis, and drug development. -
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Evo Designer
Arc Institute
Evo Designer is an advanced tool developed by the Arc Institute, leveraging the capabilities of the Evo 2 genomic foundation model to facilitate DNA sequence generation and analysis. This platform enables users to input nucleotide sequences or specify organisms, prompting the model to generate corresponding DNA sequences. It provides comprehensive annotations of coding regions and, for prokaryotic sequences, offers 3D protein visualizations utilizing ESMFold. Additionally, Evo Designer evaluates sequences by scoring their perplexity and per-nucleotide entropy, assisting researchers in assessing sequence complexity and variability. The underlying Evo 2 model is trained on over 9 trillion nucleotides from a diverse array of prokaryotic and eukaryotic genomes, employing a deep learning architecture that models biological sequences at single-nucleotide resolution with a context window extending up to 1 million tokens. -
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Evo 2
Arc Institute
Evo 2 is a genomic foundation model capable of generalist prediction and design tasks across DNA, RNA, and proteins. It utilizes a frontier deep learning architecture to model biological sequences at single-nucleotide resolution, achieving near-linear scaling of compute and memory relative to context length. Trained with 40 billion parameters and a 1 megabase context length, Evo 2 processes over 9 trillion nucleotides from diverse eukaryotic and prokaryotic genomes. This extensive training enables Evo 2 to perform zero-shot function prediction across multiple biological modalities, including DNA, RNA, and proteins, and to generate novel sequences with plausible genomic architecture. The model's capabilities have been demonstrated in tasks such as designing functional CRISPR systems and predicting disease-causing mutations in human genes. Evo 2 is publicly accessible via Arc's GitHub repository and is integrated into the NVIDIA BioNeMo framework. -
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Clarity LIMS
Illumina
Clarity LIMS is a laboratory information management system designed for genomics labs to track samples and manage workflows for an optimized and efficient lab. Clarity LIMS does much more than track samples. As the digital backbone of the lab, it actively manages your entire laboratory operations, from sample and data management to people, instruments, and consumables. Clarity LIMS standardizes and automates workflows, saving time and reducing the chance of human errors. It scales with your laboratory ecosystem to accommodate new technologies and workflows. Clarity LIMS: Helps your laboratory reduce time with straightforward implementation, prepackaged workflows for Illumina sample/library prep kits and instruments, and quality control features that flag poor-quality samples Helps support compliance with eSignature, audit trails, reagent and lot tracking, and privacy and security controls Promotes accuracy with automation and built-in business logic and error checking -
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DNAnexus Apollo
DNAnexus
DNAnexus Apollo™ accelerates precision drug discovery by unlocking the power of collaboration to draw critical insights from omics data. Precision drug discovery requires collecting and analyzing huge volumes of omics and clinical data. These datasets are incredibly rich resources, but most legacy and home-grown informatics tools can't cope with their size and complexity. Precision medicine programs can also be hampered by siloed data sources, underpowered collaboration tools, and the burden of complex and always changing regulatory and security requirements. DNAnexus Apollo™ supports precision drug discovery programs by empowering scientists and clinicians to explore and analyze omics and clinical data together, in a single environment, built on a robust, scalable cloud platform. Apollo lets them share data, tools, and analyses easily and securely with peers and collaborators everywhere - whether they're on another floor, or another continent. -
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Kanteron
Kanteron Systems
Kanteron Platform ingested medical images, digital pathology slides, genomics sequences, and patient data from modalities, scanners, sequencers and databases, and provided a complete data toolkit to every team in hospital networks. Pharmacogenomics for adverse medication event prevention, and Precision Medicine application at the point of care: Incorporates sources of drug-gene interaction data that were previously only available in in accessible formats (e.g. tables in a PDF document), implementing the major Pharmacogenomic databases (like PharmGKB, CGI, DGIdb, OpenTargets...) Allows the user to refine their query to certain gene families, types of interactions, classes of drugs, etc. Flexible AI means you can choose the data set that best fits your use case, and apply it to your relevant medical images.
